Detailed information of SNP:
|
SNP ID:
sf0234391708(Gbrowse)
Chromosome: chr02 Position: 34391708 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 57.98% | 42.02% |
| All Indica | 799 | 30.29% | 69.71% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 15.20% | 84.80% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234391708 | C->A | INTERGENIC | None |