Detailed information of SNP:
|
SNP ID:
sf0234410896(Gbrowse)
Chromosome: chr02 Position: 34410896 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 92.04% | 7.96% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 437 | 76.43% | 23.57% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 298 | 68.46% | 31.54% |
| Tropical Japonica | 83 | 96.39% | 3.61% |
| Japonica Intermediate | 56 | 89.29% | 10.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234410896 | C->G | INTERGENIC | None |