Detailed information of SNP:
|
SNP ID:
sf0234417494(Gbrowse)
Chromosome: chr02 Position: 34417494 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 82.92% | 17.08% |
| All Indica | 797 | 76.66% | 23.34% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 76.47% | 23.53% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234417494 | T->A | LOC_Os02g56260(LOC_Os02g56260.1) | INTRON |