Detailed information of SNP:
|
SNP ID:
sf0234489968(Gbrowse)
Chromosome: chr02 Position: 34489968 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 63.79% | 36.21% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 495 | 4.04% | 95.96% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234489968 | A->G | LOC_Os02g56354(LOC_Os02g56354.1) | INTRON |