Detailed information of SNP:
|
SNP ID:
sf0234495364(Gbrowse)
Chromosome: chr02 Position: 34495364 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 62.53% | 37.47% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 496 | 3.02% | 96.98% |
| Aus | 63 | 69.84% | 30.16% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234495364 | C->T | LOC_Os02g56360(LOC_Os02g56360.3) | INTRON |
| sf0234495364 | C->T | LOC_Os02g56360(LOC_Os02g56360.1) | INTRON |