Detailed information of SNP:
|
SNP ID:
sf0234496546(Gbrowse)
Chromosome: chr02 Position: 34496546 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1364 | 51.83% | 48.17% |
| All Indica | 755 | 22.91% | 77.09% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 60 | 30.00% | 70.00% |
| Indica I | 357 | 27.73% | 72.27% |
| Indica II | 199 | 17.09% | 82.91% |
| Indica Intermediate | 199 | 20.10% | 79.90% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234496546 | A->G | LOC_Os02g56360(LOC_Os02g56360.3) | Non-Synonymous SNP |
| sf0234496546 | A->G | LOC_Os02g56360(LOC_Os02g56360.1) | Non-Synonymous SNP |