Detailed information of SNP:
|
SNP ID:
sf0234511102(Gbrowse)
Chromosome: chr02 Position: 34511102 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 95.70% | 4.30% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 50 | 42.00% | 58.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234511102 | C->T | LOC_Os02g56380(LOC_Os02g56380.1) | Non-Synonymous SNP |