Detailed information of SNP:
|
SNP ID:
sf0234513980(Gbrowse)
Chromosome: chr02 Position: 34513980 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 58.54% | 41.46% |
| All Indica | 780 | 94.36% | 5.64% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 363 | 93.11% | 6.89% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234513980 | T->G | INTERGENIC | None |