Detailed information of SNP:
|
SNP ID:
sf0234585999(Gbrowse)
Chromosome: chr02 Position: 34585999 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 57.88% | 42.12% |
| All Indica | 798 | 28.45% | 71.55% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 35.29% | 64.71% |
| Indica II | 213 | 12.68% | 87.32% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234585999 | C->T | INTERGENIC | None |