Detailed information of SNP:
|
SNP ID:
sf0234619161(Gbrowse)
Chromosome: chr02 Position: 34619161 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 75.26% | 24.74% |
| All Indica | 799 | 68.96% | 31.04% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234619161 | G->A | INTERGENIC | None |