Detailed information of SNP:
|
SNP ID:
sf0234619937(Gbrowse)
Chromosome: chr02 Position: 34619937 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 56.92% | 43.08% |
| All Indica | 791 | 35.90% | 64.10% |
| All Japonica | 490 | 95.51% | 4.49% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 206 | 66.50% | 33.50% |
| Indica Intermediate | 210 | 30.48% | 69.52% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234619937 | C->T | INTERGENIC | None |