Detailed information of SNP:
SNP ID:
sf0234759554(Gbrowse)
Chromosome: chr02 Position: 34759554 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1414 | 65.28% | 34.72% |
All Indica | 796 | 97.49% | 2.51% |
All Japonica | 496 | 9.88% | 90.12% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.93% | 1.07% |
Indica II | 212 | 98.58% | 1.42% |
Indica Intermediate | 209 | 93.78% | 6.22% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 42.55% | 57.45% |
Japonica Intermediate | 67 | 5.97% | 94.03% |
Group VI/Aromatic | 14 | 42.86% | 57.14% |
Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0234759554 | C->G | LOC_Os02g56700(LOC_Os02g56700.1) | Synonymous |