Detailed information of SNP:
|
SNP ID:
sf0234861500(Gbrowse)
Chromosome: chr02 Position: 34861500 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 82.12% | 17.88% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 394 | 41.88% | 58.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 262 | 26.72% | 73.28% |
| Tropical Japonica | 77 | 75.32% | 24.68% |
| Japonica Intermediate | 55 | 67.27% | 32.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234861500 | T->A | LOC_Os02g56880(LOC_Os02g56880.1) | INTRON |