Detailed information of SNP:
|
SNP ID:
sf0234885568(Gbrowse)
Chromosome: chr02 Position: 34885568 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.17% | 35.83% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234885568 | T->C | LOC_Os02g56920(LOC_Os02g56920.1) | INTRON |