Detailed information of SNP:
|
SNP ID:
sf0234909805(Gbrowse)
Chromosome: chr02 Position: 34909805 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 95.97% | 4.03% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 421 | 87.17% | 12.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 275 | 80.73% | 19.27% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 98.28% | 1.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234909805 | C->A | INTERGENIC | None |