Detailed information of SNP:
|
SNP ID:
sf0234946622(Gbrowse)
Chromosome: chr02 Position: 34946622 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.89% | 40.11% |
| All Indica | 796 | 40.33% | 59.67% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 21.93% | 78.07% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 209 | 43.54% | 56.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234946622 | C->T | INTERGENIC | None |