Detailed information of SNP:
|
SNP ID:
sf0234951976(Gbrowse)
Chromosome: chr02 Position: 34951976 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 75.90% | 24.10% |
| All Indica | 791 | 62.45% | 37.55% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 373 | 81.77% | 18.23% |
| Indica II | 213 | 30.05% | 69.95% |
| Indica Intermediate | 205 | 60.98% | 39.02% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234951976 | G->A | INTERGENIC | None |