Detailed information of SNP:
|
SNP ID:
sf0234956769(Gbrowse)
Chromosome: chr02 Position: 34956769 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 92.50% | 7.50% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 466 | 78.76% | 21.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 69.48% | 30.52% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234956769 | A->T | INTERGENIC | None |