Detailed information of SNP:
|
SNP ID:
sf0234960148(Gbrowse)
Chromosome: chr02 Position: 34960148 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.32% | 43.68% |
| All Indica | 798 | 38.85% | 61.15% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 43.81% | 56.19% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234960148 | C->T | LOC_Os02g57100(LOC_Os02g57100.1) | INTRON |