Detailed information of SNP:
|
SNP ID:
sf0234961074(Gbrowse)
Chromosome: chr02 Position: 34961074 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.05% | 41.95% |
| All Indica | 797 | 38.02% | 61.98% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 18.98% | 81.02% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 210 | 42.86% | 57.14% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234961074 | G->A | INTERGENIC | None |