Detailed information of SNP:
|
SNP ID:
sf0234985154(Gbrowse)
Chromosome: chr02 Position: 34985154 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 82.34% | 17.66% |
| All Indica | 799 | 75.34% | 24.66% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234985154 | T->C | INTERGENIC | None |