Detailed information of SNP:
|
SNP ID:
sf0235013330(Gbrowse)
Chromosome: chr02 Position: 35013330 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 51.10% | 48.90% |
| All Indica | 792 | 74.49% | 25.51% |
| All Japonica | 495 | 12.32% | 87.68% |
| Aus | 63 | 76.19% | 23.81% |
| Indica I | 374 | 68.18% | 31.82% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 208 | 67.79% | 32.21% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 66 | 15.15% | 84.85% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235013330 | A->G | INTERGENIC | None |