Detailed information of SNP:
|
SNP ID:
sf0235040932(Gbrowse)
Chromosome: chr02 Position: 35040932 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 85.94% | 14.06% |
| All Indica | 795 | 81.51% | 18.49% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 44.02% | 55.98% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235040932 | G->A | INTERGENIC | None |