Detailed information of SNP:
|
SNP ID:
sf0235049957(Gbrowse)
Chromosome: chr02 Position: 35049957 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.39% | 46.61% |
| All Indica | 798 | 31.58% | 68.42% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 6.13% | 93.87% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 28.10% | 71.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235049957 | G->A | INTERGENIC | None |