Detailed information of SNP:
|
SNP ID:
sf0235052444(Gbrowse)
Chromosome: chr02 Position: 35052444 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 96.76% | 3.24% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235052444 | G->A | LOC_Os02g57220(LOC_Os02g57220.1) | INTRON |