Detailed information of SNP:
|
SNP ID:
sf0235057721(Gbrowse)
Chromosome: chr02 Position: 35057721 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.28% | 46.72% |
| All Indica | 797 | 74.40% | 25.60% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 24.17% | 75.83% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235057721 | A->G | INTERGENIC | None |