Detailed information of SNP:
|
SNP ID:
sf0235062516(Gbrowse)
Chromosome: chr02 Position: 35062516 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.67% | 46.33% |
| All Indica | 797 | 74.40% | 25.60% |
| All Japonica | 496 | 16.13% | 83.87% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 23.70% | 76.30% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235062516 | C->T | LOC_Os02g57240(LOC_Os02g57240.1) | Synonymous |