Detailed information of SNP:
|
SNP ID:
sf0235102846(Gbrowse)
Chromosome: chr02 Position: 35102846 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 61.81% | 38.19% |
| All Indica | 795 | 89.18% | 10.82% |
| All Japonica | 497 | 17.30% | 82.70% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235102846 | C->T | INTERGENIC | None |