Detailed information of SNP:
|
SNP ID:
sf0235110028(Gbrowse)
Chromosome: chr02 Position: 35110028 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 60.76% | 39.24% |
| All Indica | 795 | 87.67% | 12.33% |
| All Japonica | 494 | 16.40% | 83.60% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 66 | 43.94% | 56.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235110028 | T->C | LOC_Os02g57310(LOC_Os02g57310.1) | UTR_5_PRIME |