Detailed information of SNP:
|
SNP ID:
sf0235110086(Gbrowse)
Chromosome: chr02 Position: 35110086 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 50.50% | 49.50% |
| All Indica | 794 | 79.09% | 20.91% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 372 | 84.41% | 15.59% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235110086 | G->A | LOC_Os02g57310(LOC_Os02g57310.1) | UTR_5_PRIME |