Detailed information of SNP:
|
SNP ID:
sf0235115485(Gbrowse)
Chromosome: chr02 Position: 35115485 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.60% | 43.40% |
| All Indica | 797 | 36.01% | 63.99% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 373 | 7.24% | 92.76% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235115485 | C->T | LOC_Os02g57330(LOC_Os02g57330.2) | Non-Synonymous SNP |
| sf0235115485 | C->T | LOC_Os02g57330(LOC_Os02g57330.1) | Non-Synonymous SNP |