Detailed information of SNP:
|
SNP ID:
sf0235117216(Gbrowse)
Chromosome: chr02 Position: 35117216 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.89% | 38.11% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 17.30% | 82.70% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235117216 | T->C | LOC_Os02g57340(LOC_Os02g57340.1) | Non-Synonymous SNP |