Detailed information of SNP:
|
SNP ID:
sf0235118024(Gbrowse)
Chromosome: chr02 Position: 35118024 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 84.11% | 15.89% |
| All Indica | 798 | 77.82% | 22.18% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 31.60% | 68.40% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235118024 | A->G | LOC_Os02g57340(LOC_Os02g57340.1) | Non-Synonymous SNP |