Detailed information of SNP:
|
SNP ID:
sf0235120528(Gbrowse)
Chromosome: chr02 Position: 35120528 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.64% | 38.36% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235120528 | C->T | LOC_Os02g57340(LOC_Os02g57340.1) | UTR_3_PRIME |