Detailed information of SNP:
|
SNP ID:
sf0235120779(Gbrowse)
Chromosome: chr02 Position: 35120779 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.21% | 38.79% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235120779 | G->C | LOC_Os02g57340(LOC_Os02g57340.1) | UTR_3_PRIME |