Detailed information of SNP:
|
SNP ID:
sf0235122323(Gbrowse)
Chromosome: chr02 Position: 35122323 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.76% | 42.24% |
| All Indica | 798 | 83.96% | 16.04% |
| All Japonica | 497 | 15.29% | 84.71% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235122323 | C->G | INTERGENIC | None |