Detailed information of SNP:
|
SNP ID:
sf0235122834(Gbrowse)
Chromosome: chr02 Position: 35122834 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.94% | 45.06% |
| All Indica | 798 | 79.57% | 20.43% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235122834 | T->C | INTERGENIC | None |