Detailed information of SNP:
|
SNP ID:
sf0235122859(Gbrowse)
Chromosome: chr02 Position: 35122859 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.21% | 38.79% |
| All Indica | 798 | 88.72% | 11.28% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235122859 | A->G | INTERGENIC | None |