Detailed information of SNP:
|
SNP ID:
sf0235139944(Gbrowse)
Chromosome: chr02 Position: 35139944 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 70.15% | 29.85% |
| All Indica | 798 | 54.64% | 45.36% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 52.53% | 47.47% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235139944 | T->A | INTERGENIC | None |