Detailed information of SNP:
|
SNP ID:
sf0235172184(Gbrowse)
Chromosome: chr02 Position: 35172184 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 83.16% | 16.84% |
| All Indica | 799 | 74.22% | 25.78% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 53.07% | 46.93% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235172184 | G->A | INTERGENIC | None |