Detailed information of SNP:
|
SNP ID:
sf0235172493(Gbrowse)
Chromosome: chr02 Position: 35172493 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 91.25% | 8.75% |
| All Indica | 797 | 85.45% | 14.55% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 82.09% | 17.91% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.6) | UTR_3_PRIME |
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.7) | UTR_3_PRIME |
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.8) | UTR_3_PRIME |
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.2) | UTR_3_PRIME |
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.1) | UTR_3_PRIME |
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.3) | UTR_3_PRIME |
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.9) | UTR_3_PRIME |
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.10) | UTR_3_PRIME |
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.5) | UTR_3_PRIME |
| sf0235172493 | T->G | LOC_Os02g57410(LOC_Os02g57410.4) | UTR_3_PRIME |