Detailed information of SNP:
|
SNP ID:
sf0235181095(Gbrowse)
Chromosome: chr02 Position: 35181095 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 57.67% | 42.33% |
| All Indica | 796 | 38.07% | 61.93% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 41.87% | 58.13% |
| Indica II | 212 | 21.23% | 78.77% |
| Indica Intermediate | 209 | 48.33% | 51.67% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235181095 | A->C | INTERGENIC | None |