Detailed information of SNP:
|
SNP ID:
sf0235181952(Gbrowse)
Chromosome: chr02 Position: 35181952 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.35% | 49.65% |
| All Indica | 799 | 75.97% | 24.03% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 375 | 70.93% | 29.07% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235181952 | C->A | INTERGENIC | None |