Detailed information of SNP:
|
SNP ID:
sf0235223701(Gbrowse)
Chromosome: chr02 Position: 35223701 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 67.96% | 32.04% |
| All Indica | 794 | 99.24% | 0.76% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 99.03% | 0.97% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235223701 | T->C | INTERGENIC | None |