Detailed information of SNP:
|
SNP ID:
sf0235243720(Gbrowse)
Chromosome: chr02 Position: 35243720 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1287 | 90.91% | 9.09% |
| All Indica | 696 | 86.78% | 13.22% |
| All Japonica | 478 | 97.07% | 2.93% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 369 | 86.99% | 13.01% |
| Indica II | 152 | 92.11% | 7.89% |
| Indica Intermediate | 175 | 81.71% | 18.29% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 79 | 83.54% | 16.46% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235243720 | A->G | INTERGENIC | None |