Detailed information of SNP:



SNP ID: sf0235253360(Gbrowse)

Chromosome: chr02

Position: 35253360
Major allele: T

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1419 65.54% 34.46%
All Indica799 98.25% 1.75%
All Japonica497 13.48% 86.52%
Aus67 59.70% 40.30%
Indica I375 96.80% 3.20%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 4.18% 95.82%
Tropical Japonica94 32.98% 67.02%
Japonica Intermediate68 32.35% 67.65%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0235253360 A->T INTERGENIC None