Detailed information of SNP:
|
SNP ID:
sf0235253579(Gbrowse)
Chromosome: chr02 Position: 35253579 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.46% | 35.54% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 13.08% | 86.92% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235253579 | G->A | INTERGENIC | None |