Detailed information of SNP:
|
SNP ID:
sf0235261576(Gbrowse)
Chromosome: chr02 Position: 35261576 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 58.83% | 41.17% |
| All Indica | 797 | 39.40% | 60.60% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 375 | 20.53% | 79.47% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 209 | 45.93% | 54.07% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 6 | 66.67% | 33.33% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235261576 | C->T | INTERGENIC | None |