Detailed information of SNP:
|
SNP ID:
sf0235265920(Gbrowse)
Chromosome: chr02 Position: 35265920 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 68.43% | 31.57% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 13.10% | 86.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235265920 | T->C | LOC_Os02g57590(LOC_Os02g57590.3) | INTRON |
| sf0235265920 | T->C | LOC_Os02g57590(LOC_Os02g57590.1) | INTRON |
| sf0235265920 | T->C | LOC_Os02g57590(LOC_Os02g57590.2) | INTRON |