Detailed information of SNP:
|
SNP ID:
sf0235276379(Gbrowse)
Chromosome: chr02 Position: 35276379 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 94.50% | 5.50% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 84.48% | 15.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 78.14% | 21.86% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235276379 | G->A | LOC_Os02g57610(LOC_Os02g57610.1) | INTRON |
| sf0235276379 | G->A | LOC_Os02g57610(LOC_Os02g57610.2) | INTRON |